PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G07460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 461aa    MW: 49937.8 Da    PI: 6.2257
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G07460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16108154148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEde l + v+ +G + W+ Ia+ ++ gR +kqc++rw ++l
  ORUFI07G07460.1 108 KGGWTREEDEVLRQMVRHHGDRKWAEIAKSLP-GRVGKQCRERWTNHL 154
                      688*****************************.************996 PP

2Myb_DNA-binding45.41.9e-14163202445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      W +eEd  l++a++ +G+  W++Ia+ ++ gR+++ +k++w+
  ORUFI07G07460.1 163 WIEEEDRMLIEAHQTYGNS-WSAIAKQLP-GRSENTIKNHWN 202
                      99***************99.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.56103158IPR017930Myb domain
SuperFamilySSF466891.8E-30105201IPR009057Homeodomain-like
SMARTSM007173.2E-15107156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-23110159IPR009057Homeodomain-like
CDDcd001672.10E-15111154No hitNo description
PfamPF139214.2E-16111168No hitNo description
SMARTSM007174.9E-14159207IPR001005SANT/Myb domain
PROSITE profilePS5129415.337159209IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-21160206IPR009057Homeodomain-like
CDDcd001676.48E-12163205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAAAGNSFLN QELVKVADGV SDWHLPSSSH GGTCHTNTRG APITVGVPDL GCPVSSIGMA  60
TSSSLMPKEG LTTASYNSVV AFPVGATMVP QQQQTQAAGS NDNPGLVKGG WTREEDEVLR  120
QMVRHHGDRK WAEIAKSLPG RVGKQCRERW TNHLHPDIKK DIWIEEEDRM LIEAHQTYGN  180
SWSAIAKQLP GRSENTIKNH WNATKRSLNS KRRLRKKNSE QTVPGQPSLL ESYIRSCQHM  240
LPSETVPPPP APPAPFDISR YGNSGVIGAS PTLPVVQEPG TSTPPGLVMF LDLLNQAIPH  300
PPQPETMDLF NMTPEVSHLN TSGYCLQLDA GGNLYYGRLP APAPVQPHGI STQELQDTPQ  360
LSLYYPLSSF AGSHTDGTVE FNHQLSNPNG GHYGEEAGPS SVAAGGSANG MDDNDVVQMA  420
SNQFMMPSED EGNSFLNQEL LMVVNNMTDR HIMRSHGGAS Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-421042103110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645903.10.0PREDICTED: transcription factor RAX1-like
TrEMBLA0A0E0Q5P10.0A0A0E0Q5P1_ORYRU; Uncharacterized protein
STRINGLOC_Os07g12130.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-46myb domain protein 98